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update_r_packages: Change the way the debian packages are installed. Now a failure involves that single package and not the whole list.

This commit is contained in:
Andrea Dell'Amico 2017-09-28 13:32:56 +02:00
parent 950e8e4d27
commit 370590b93b
1 changed files with 5 additions and 1 deletions
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6
R/templates/update_r_packages.sh.j2
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@ -139,7 +139,11 @@ function debian_pkgs() {
else
logger "update_r_packages: APT cache not updated"
fi
xargs -a <(awk '/^\s*[^#]/' "$PKGS_LIST") -r -- apt-get install -q -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confold" >/var/log/update_r_debs.log 2>&1
>/var/log/update_r_debs.log
while read deb_pkg ; do
apt-get install ${deb_pkg} -q -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confold" >>/var/log/update_r_debs.log 2>&1
done < $PKGS_LIST
apt-get autoremove -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confold" >> /var/log/update_r_debs.log 2>&1
else
logger "update_r_packages: skipping the debian packages installation"
fi