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library/isti_vars/r-packages.yml: Add some R packages. 

library/roles/R/tasks/r-installation.yml: Add some checks.
This commit is contained in:
Andrea Dell'Amico 2016-10-14 14:33:19 +02:00
parent b446c20fb5
commit 465eeb8fe7
1 changed files with 21 additions and 0 deletions
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21
R/tasks/r-installation.yml
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@ -102,6 +102,26 @@
tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_github' ] tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_github' ]
ignore_errors: True ignore_errors: True
- name: Install R packages from the cran sources, specific versions. First round
command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
register: install_s_plugins_result
failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
changed_when: '"Added" in install_s_plugins_result.stdout'
with_items: '{{ r_plugins_from_sources | default([]) }}'
ignore_errors: True
tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
- name: Install R packages from the cran sources, specific versions. Second round, to avoid circular dependencies
command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
register: install_s_plugins_result
failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
changed_when: '"Added" in install_s_plugins_result.stdout'
with_items: '{{ r_plugins_from_sources | default([]) }}'
when: ( install_s_plugins_result | failed )
tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
- name: Remove R unwanted packages - name: Remove R unwanted packages
command: > command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { print('Not installed'); } else { remove.packages(pkgs='{{ item }}'); print('Removed'); }" Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { print('Not installed'); } else { remove.packages(pkgs='{{ item }}'); print('Removed'); }"
@ -111,3 +131,4 @@
with_items: '{{ r_plugins_list_to_remove | default([]) }}' with_items: '{{ r_plugins_list_to_remove | default([]) }}'
when: r_plugins_list_to_remove is defined when: r_plugins_list_to_remove is defined
tags: [ 'r_software', 'r_pkg', 'r_plugins' ] tags: [ 'r_software', 'r_pkg', 'r_plugins' ]