From 6ff48d01a7d2cb7ed03d6ffc227e6edfc547377a Mon Sep 17 00:00:00 2001
From: Andrea Dell'Amico <adellam@sevenseas.org>
Date: Wed, 17 Feb 2016 17:05:38 +0100
Subject: [PATCH] 
 d4science-ghn-cluster/roles/dataminer_app/templates/wps_config.xml.j2: Update
 the configuration. library/roles/R/files/r_packages_cleanup.sh: Remove
 /usr/local/lib/R too.
 d4science-ghn-cluster/roles/dataminer_app/tasks/dataminer-app.yml: remove an
 unused jar that can cause problems.

---
 R/files/r_packages_cleanup.sh | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/R/files/r_packages_cleanup.sh b/R/files/r_packages_cleanup.sh
index d17d47e..e86b4f6 100644
--- a/R/files/r_packages_cleanup.sh
+++ b/R/files/r_packages_cleanup.sh
@@ -4,10 +4,11 @@
 for package in r-base r-base-core r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended ; do apt-mark unhold $package; done
 
 # Remove the old r packages
-apt-get purge r-base-* r-cran-* -y
+apt-get purge r-base-* r-cran-* -y --force-yes
+apt-get autoremove -y
 
 # Remove the CRAN packages
-rm -fr /usr/lib/R  /usr/local/lib/R
+rm -fr /usr/lib/R/site-library  /usr/local/lib/R/site-library
 rm -fr /var/cache/R/*
 
 exit 0