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d4science-ghn-cluster/group_vars/egi_smartexecutor: explicitly list the R packages to be installed. 

d4science-ghn-cluster/group_vars/mongo_cluster_prod/iptables.yml: Add the last cloud provider's networks.
d4science-ghn-cluster/host_vars: Remove the old host_vars definitions.
d4science-ghn-cluster/group_vars/smartexecutor_prod/r-packages.yml: explicitly list the R packages to be installed.
d4science-ghn-cluster/inventory/hosts.production: Merge the smartexecutor_prod groups.
This commit is contained in:
Andrea Dell'Amico 2015-12-21 18:23:08 +01:00
parent 344b80ea8b
commit 39133e2127
2 changed files with 13 additions and 5 deletions
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3
R/defaults/main.yml
View File

@ -14,7 +14,8 @@ r_install_cran_repo: absent
r_cran_mirror_site: http://cran.mirror.garr.it/mirrors/CRAN/ r_cran_mirror_site: http://cran.mirror.garr.it/mirrors/CRAN/
r_base_specific_version: False r_base_specific_version: False
r_base_pkg_version: 2.14.1 r_base_pkg_version: 2.14.1
r_packages_state: present r_packages_main_state: present
r_packages_state: '{{ r_packages_main_state }}'
r_needs_additional_distro_pkgs: False r_needs_additional_distro_pkgs: False
r_plugins_from_deb: True r_plugins_from_deb: True
r_plugins_install_latest_source: True r_plugins_install_latest_source: True

15
R/tasks/main.yml
View File

@ -7,8 +7,15 @@
apt_repository: repo='deb http://cran.rstudio.com/bin/linux/ubuntu {{ ansible_distribution_release }}/' state={{ r_install_cran_repo }} update_cache=yes apt_repository: repo='deb http://cran.rstudio.com/bin/linux/ubuntu {{ ansible_distribution_release }}/' state={{ r_install_cran_repo }} update_cache=yes
tags: [ 'r_software', 'r_repo' ] tags: [ 'r_software', 'r_repo' ]
- name: Install a specific version of the R base package - name: Remove the hold state from the debian R packages
apt: pkg={{ item }} state={{ r_packages_state }} shell: apt-mark unhold {{ item }}
with_items: r_base_packages_hold_list
when: r_base_packages_hold_list is defined
ignore_errors: True
tags: [ 'r_software', 'r_pkg', 'r_pkg_hold' ]
- name: Install the R base packages.
apt: pkg={{ item }} state={{ r_packages_main_state }} force=yes
with_items: r_base_packages_list with_items: r_base_packages_list
tags: [ 'r_software', 'r_pkg' ] tags: [ 'r_software', 'r_pkg' ]
@ -20,13 +27,13 @@
tags: [ 'r_software', 'r_pkg', 'r_pkg_hold' ] tags: [ 'r_software', 'r_pkg', 'r_pkg_hold' ]
- name: Install the R additional modules from the deb repo - name: Install the R additional modules from the deb repo
apt: pkg={{ item }} state={{ r_packages_state }} apt: pkg={{ item }} state={{ r_packages_state }} force=yes
with_items: r_plugins_packages_list with_items: r_plugins_packages_list
when: r_plugins_from_deb when: r_plugins_from_deb
tags: [ 'r_software', 'r_pkg' ] tags: [ 'r_software', 'r_pkg' ]
- name: Install some packages needed by R plugins when installed from source, if needed - name: Install some packages needed by R plugins when installed from source, if needed
apt: pkg={{ item }} state={{ r_packages_state }} update_cache=yes apt: pkg={{ item }} state={{ r_packages_state }} update_cache=yes force=yes
with_items: r_distribution_required_packages with_items: r_distribution_required_packages
when: r_needs_additional_distro_pkgs when: r_needs_additional_distro_pkgs
tags: [ 'r_software', 'r_pkg' ] tags: [ 'r_software', 'r_pkg' ]