From 465eeb8fe7d13e1d0ba1bb24784fdc851511807e Mon Sep 17 00:00:00 2001
From: Andrea Dell'Amico <adellam@isti.cnr.it>
Date: Fri, 14 Oct 2016 14:33:19 +0200
Subject: [PATCH] library/isti_vars/r-packages.yml: Add some R packages.
 library/roles/R/tasks/r-installation.yml: Add some checks.

---
 R/tasks/r-installation.yml | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/R/tasks/r-installation.yml b/R/tasks/r-installation.yml
index f15c3302..93af5b35 100644
--- a/R/tasks/r-installation.yml
+++ b/R/tasks/r-installation.yml
@@ -102,6 +102,26 @@
   tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_github' ]
   ignore_errors: True
 
+- name: Install R packages from the cran sources, specific versions. First round
+  command: >
+    Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
+  register: install_s_plugins_result
+  failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
+  changed_when: '"Added" in install_s_plugins_result.stdout'
+  with_items: '{{ r_plugins_from_sources | default([]) }}'
+  ignore_errors: True
+  tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
+
+- name: Install R packages from the cran sources, specific versions. Second round, to avoid circular dependencies
+  command: >
+    Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
+  register: install_s_plugins_result
+  failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
+  changed_when: '"Added" in install_s_plugins_result.stdout'
+  with_items: '{{ r_plugins_from_sources | default([]) }}'
+  when: ( install_s_plugins_result | failed )
+  tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
+
 - name: Remove R unwanted packages
   command: >
     Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { print('Not installed'); } else { remove.packages(pkgs='{{ item }}'); print('Removed'); }"
@@ -111,3 +131,4 @@
   with_items: '{{ r_plugins_list_to_remove | default([]) }}'
   when: r_plugins_list_to_remove is defined
   tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
+