from abc import ABCMeta, abstractmethod from copy import deepcopy from joblib import Parallel, delayed from sklearn.base import BaseEstimator import quapy as qp from quapy.data import LabelledCollection import numpy as np # Base Quantifier abstract class # ------------------------------------ class BaseQuantifier(BaseEstimator): """ Abstract Quantifier. A quantifier is defined as an object of a class that implements the method :meth:`fit` on :class:`quapy.data.base.LabelledCollection`, the method :meth:`quantify`, and the :meth:`set_params` and :meth:`get_params` for model selection (see :meth:`quapy.model_selection.GridSearchQ`) """ @abstractmethod def fit(self, data: LabelledCollection): """ Trains a quantifier. :param data: a :class:`quapy.data.base.LabelledCollection` consisting of the training data :return: self """ ... @abstractmethod def quantify(self, instances): """ Generate class prevalence estimates for the sample's instances :param instances: array-like :return: `np.ndarray` of shape `(n_classes,)` with class prevalence estimates. """ ... class BinaryQuantifier(BaseQuantifier): """ Abstract class of binary quantifiers, i.e., quantifiers estimating class prevalence values for only two classes (typically, to be interpreted as one class and its complement). """ def _check_binary(self, data: LabelledCollection, quantifier_name): assert data.binary, f'{quantifier_name} works only on problems of binary classification. ' \ f'Use the class OneVsAll to enable {quantifier_name} work on single-label data.' class OneVsAll: pass def newOneVsAll(binary_quantifier, n_jobs=None): assert isinstance(binary_quantifier, BaseQuantifier), \ f'{binary_quantifier} does not seem to be a Quantifier' if isinstance(binary_quantifier, qp.method.aggregative.AggregativeQuantifier): return qp.method.aggregative.OneVsAllAggregative(binary_quantifier, n_jobs) else: return OneVsAllGeneric(binary_quantifier, n_jobs) class OneVsAllGeneric(OneVsAll,BaseQuantifier): """ Allows any binary quantifier to perform quantification on single-label datasets. The method maintains one binary quantifier for each class, and then l1-normalizes the outputs so that the class prevelence values sum up to 1. """ def __init__(self, binary_quantifier, n_jobs=None): assert isinstance(binary_quantifier, BaseQuantifier), \ f'{binary_quantifier} does not seem to be a Quantifier' if isinstance(binary_quantifier, qp.method.aggregative.AggregativeQuantifier): print('[warning] the quantifier seems to be an instance of qp.method.aggregative.AggregativeQuantifier; ' f'you might prefer instantiating {qp.method.aggregative.OneVsAllAggregative.__name__}') self.binary_quantifier = binary_quantifier self.n_jobs = qp._get_njobs(n_jobs) def fit(self, data: LabelledCollection, fit_classifier=True): assert not data.binary, f'{self.__class__.__name__} expect non-binary data' assert fit_classifier == True, 'fit_classifier must be True' self.dict_binary_quantifiers = {c: deepcopy(self.binary_quantifier) for c in data.classes_} self._parallel(self._delayed_binary_fit, data) return self def _parallel(self, func, *args, **kwargs): return np.asarray( Parallel(n_jobs=self.n_jobs, backend='threading')( delayed(func)(c, *args, **kwargs) for c in self.classes_ ) ) def quantify(self, instances): prevalences = self._parallel(self._delayed_binary_predict, instances) return qp.functional.normalize_prevalence(prevalences) @property def classes_(self): return sorted(self.dict_binary_quantifiers.keys()) def _delayed_binary_predict(self, c, X): return self.dict_binary_quantifiers[c].quantify(X)[1] def _delayed_binary_fit(self, c, data): bindata = LabelledCollection(data.instances, data.labels == c, classes=[False, True]) self.dict_binary_quantifiers[c].fit(bindata)