From 158db04660eb36a3727406e3e4de5e3c721fd9b8 Mon Sep 17 00:00:00 2001
From: iasonmanolas <iasonmanolasece@gmail.com>
Date: Thu, 20 Oct 2022 13:32:42 +0300
Subject: [PATCH] Refactoring

---
 CMakeLists.txt                                |  71 ++--
 csvfile.hpp                                   | 128 +++---
 .../LongSpanGridshell_displacements.eigenBin  | Bin 0 -> 6736 bytes
 .../ShortSpanGridshell_displacements.eigenBin | Bin 0 -> 1024 bytes
 .../SimpleBeam_displacements.eigenBin         | Bin 0 -> 256 bytes
 .../{ => Cylindrical}/longSpanGridshell.ply   |   0
 .../{ => Cylindrical}/shortSpanGridshell.ply  |   0
 .../{ => Cylindrical}/simpleBeam.ply          |   0
 .../LongSpanGridshell_displacements.eigenBin  | Bin 6736 -> 0 bytes
 .../ShortSpanGridshell_displacements.eigenBin | Bin 1024 -> 0 bytes
 .../SimpleBeam_displacements.eigenBin         | Bin 256 -> 0 bytes
 .../LongSpanGridshell_displacements.eigenBin  | Bin 0 -> 6736 bytes
 .../ShortSpanGridshell_displacements.eigenBin | Bin 0 -> 1024 bytes
 .../SimpleBeam_displacements.eigenBin         | Bin 0 -> 256 bytes
 .../longSpanGridshell.ply                     | 374 ++++++++++++++++++
 .../shortSpanGridshell.ply                    |  69 ++++
 .../rectangularCrossSection/simpleBeam.ply    |  26 ++
 17 files changed, 566 insertions(+), 102 deletions(-)
 create mode 100644 formFinder_unitTestFiles/Cylindrical/LongSpanGridshell_displacements.eigenBin
 create mode 100644 formFinder_unitTestFiles/Cylindrical/ShortSpanGridshell_displacements.eigenBin
 create mode 100644 formFinder_unitTestFiles/Cylindrical/SimpleBeam_displacements.eigenBin
 rename formFinder_unitTestFiles/{ => Cylindrical}/longSpanGridshell.ply (100%)
 rename formFinder_unitTestFiles/{ => Cylindrical}/shortSpanGridshell.ply (100%)
 rename formFinder_unitTestFiles/{ => Cylindrical}/simpleBeam.ply (100%)
 delete mode 100644 formFinder_unitTestFiles/LongSpanGridshell_displacements.eigenBin
 delete mode 100644 formFinder_unitTestFiles/ShortSpanGridshell_displacements.eigenBin
 delete mode 100644 formFinder_unitTestFiles/SimpleBeam_displacements.eigenBin
 create mode 100644 formFinder_unitTestFiles/rectangularCrossSection/LongSpanGridshell_displacements.eigenBin
 create mode 100644 formFinder_unitTestFiles/rectangularCrossSection/ShortSpanGridshell_displacements.eigenBin
 create mode 100644 formFinder_unitTestFiles/rectangularCrossSection/SimpleBeam_displacements.eigenBin
 create mode 100644 formFinder_unitTestFiles/rectangularCrossSection/longSpanGridshell.ply
 create mode 100644 formFinder_unitTestFiles/rectangularCrossSection/shortSpanGridshell.ply
 create mode 100644 formFinder_unitTestFiles/rectangularCrossSection/simpleBeam.ply

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 265a60d..bc00ce6 100755
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -23,26 +23,24 @@ file(MAKE_DIRECTORY ${EXTERNAL_DEPS_DIR})
 set(DRMSimulationModelDir "/home/iason/Coding/Libraries/DRMSimulationModel")
 set(DRMSimulationModelBuildDir ${CMAKE_BINARY_DIR}/_deps)
 add_subdirectory(${DRMSimulationModelDir} ${DRMSimulationModelBuildDir})
-target_link_libraries(${PROJECT_NAME} PUBLIC DRMSimulationModel)
-target_include_directories(${PROJECT_NAME} PUBLIC ${DRMSimulationModelDir})
+target_link_libraries(${PROJECT_NAME} PUBLIC DRMSimulationModel_lib)
+#target_include_directories(${PROJECT_NAME} PUBLIC DRMSimulationModel_)
 
 #target_sources(${PROJECT_NAME} PUBLIC ${DRMSimulationModelDir}/simulationmodel.hpp)
-##dlib
-#set(DLIB_BIN_DIR ${CMAKE_CURRENT_BINARY_DIR}/dlib)
-#download_project(PROJ               DLIB
-#                 GIT_REPOSITORY     https://github.com/davisking/dlib.git
-#                 GIT_TAG	    master
-#                 BINARY_DIR         ${DLIB_BIN_DIR}
-#                 PREFIX             ${EXTERNAL_DEPS_DIR}
-#                 ${UPDATE_DISCONNECTED_IF_AVAILABLE}
-#)
-#add_subdirectory(${DLIB_SOURCE_DIR} ${DLIB_BIN_DIR})
-#if(${MYSOURCES_STATIC_LINK})
-#        target_link_libraries(${PROJECT_NAME} PUBLIC -static dlib::dlib)
-#else()
-#        target_link_libraries(${PROJECT_NAME} PUBLIC dlib::dlib)
-#endif()
-#add_compile_definitions(DLIB_DEFINED)
+if(${USE_DLIB})
+        FetchContent_Declare(dlib
+                         GIT_REPOSITORY     https://github.com/davisking/dlib.git
+                         GIT_TAG	    master
+          )
+        FetchContent_MakeAvailable(dlib)
+        #add_subdirectory(${DLIB_SOURCE_DIR} ${DLIB_BIN_DIR})
+        if(${MYSOURCES_STATIC_LINK})
+                target_link_libraries(${PROJECT_NAME} PUBLIC -static dlib::dlib)
+        else()
+                target_link_libraries(${PROJECT_NAME} PUBLIC dlib::dlib)
+        endif()
+        add_compile_definitions(DLIB_DEFINED)
+endif()
 
 ## polyscope
 if(#[[NOT TARGET polyscope AND]] ${USE_POLYSCOPE})
@@ -89,15 +87,6 @@ FetchContent_Declare(matplot
                  GIT_TAG		master
   )
 FetchContent_MakeAvailable(matplot)
-target_include_directories(${PROJECT_NAME} PUBLIC ${matplot_SOURCE_DIR})
-#set(MATPLOTPLUSPLUS_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/matplot)
-#download_project(PROJ               MATPLOTPLUSPLUS
-#                 GIT_TAG	    master
-#                 BINARY_DIR		${MATPLOTPLUSPLUS_BINARY_DIR}
-#                 PREFIX             ${EXTERNAL_DEPS_DIR}
-#                 ${UPDATE_DISCONNECTED_IF_AVAILABLE}
-#                 )
-#add_subdirectory(${MATPLOTPLUSPLUS_SOURCE_DIR} ${MATPLOTPLUSPLUS_BINARY_DIR})
 
 ##threed-beam-fea
 if(NOT TARGET ThreedBeamFEA)
@@ -130,9 +119,9 @@ if(${MYSOURCES_STATIC_LINK})
 endif()
 if(${MYSOURCES_STATIC_LINK})
         message("Linking statically here")
-        target_link_libraries(${PROJECT_NAME} PUBLIC #[[-static]] Eigen3::Eigen matplot pthread gfortran quadmath)
+        target_link_libraries(${PROJECT_NAME} PUBLIC #[[-static]] Eigen3::Eigen pthread gfortran quadmath matplot)
 else()
-        target_link_libraries(${PROJECT_NAME} PUBLIC Eigen3::Eigen matplot tbb pthread)
+        target_link_libraries(${PROJECT_NAME} PUBLIC Eigen3::Eigen tbb pthread matplot)
 endif()
 
 target_link_directories(MySources PUBLIC ${CMAKE_CURRENT_LIST_DIR}/boost_graph/libs)
@@ -163,17 +152,8 @@ target_link_libraries(${PROJECT_NAME} PUBLIC "/home/iason/Coding/Libraries/armad
 #endif()
 #target_link_libraries(${PROJECT_NAME} PUBLIC "/home/iason/Coding/build/FormFInder/Debug/_deps/armadillo-build/libarmadillo.a")
 
-###ENSMALLEN
-#FetchContent_Declare(ensmallen
-#                 GIT_REPOSITORY  https://github.com/mlpack/ensmallen.git
-#                 GIT_TAG	master
-#  )
-#FetchContent_MakeAvailable(ensmallen)
-#target_link_libraries(${PROJECT_NAME} PRIVATE ensmallen)
-#target_include_directories(${PROJECT_NAME}
-#PUBLIC ${ensmallen_SOURCE_DIR}/include)
-#add_compile_definitions(USE_ENSMALLEN)
 
+if(${USE_ENSMALLEN})
 set(ENSMALLEN_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/ensmallen)
 download_project(PROJ			ENSMALLEN
                  GIT_REPOSITORY         https://github.com/mlpack/ensmallen.git
@@ -184,9 +164,18 @@ download_project(PROJ			ENSMALLEN
 )
 target_include_directories(${PROJECT_NAME}
 PUBLIC ${ENSMALLEN_SOURCE_DIR}/include)
-message("ens dir:" ${ENSMALLEN_SOURCE_DIR})
 add_compile_definitions(USE_ENSMALLEN)
-#endif()
+###ENSMALLEN
+#FetchContent_Declare(ensmallen
+#                 GIT_REPOSITORY  https://github.com/mlpack/ensmallen.git
+#                 GIT_TAG	master
+#  )
+#FetchContent_MakeAvailable(ensmallen)
+#target_link_libraries(${PROJECT_NAME} PRIVATE ensmallen)
+#target_include_directories(${PROJECT_NAME}
+#PUBLIC ${ensmallen_SOURCE_DIR}/include)
+#add_compile_definitions(USE_ENSMALLEN)
+endif()
 
 ##Chrono
 ##add_subdirectory("/home/iason/Coding/build/external dependencies/CHRONO-src" "/home/iason/Coding/build/external dependencies/CHRONO-src/build")
diff --git a/csvfile.hpp b/csvfile.hpp
index a90bbfd..e867cd6 100755
--- a/csvfile.hpp
+++ b/csvfile.hpp
@@ -9,39 +9,43 @@
 #include <string>
 #include <vector>
 
-class csvFile;
+class CSVFile;
 
-inline static csvFile &endrow(csvFile &file);
-inline static csvFile &flush(csvFile &file);
+inline static CSVFile& endrow(CSVFile& file);
+inline static CSVFile& flush(CSVFile& file);
 
-class csvFile {
+class CSVFile {
   std::ofstream fs_;
   bool is_first_;
   const std::string separator_;
   const std::string escape_seq_;
   const std::string special_chars_;
 
-  public:
-  csvFile(const std::filesystem::path &filename,
-          const bool &overwrite,
+ public:
+  CSVFile(const std::filesystem::path& filename,
+          const bool& overwrite,
           const std::string separator = ",")
-      : fs_(), is_first_(true), separator_(separator), escape_seq_("\""), special_chars_("\"")
-  {
-      fs_.exceptions(std::ios::failbit | std::ios::badbit);
-      if (filename.empty()) {
-          fs_.copyfmt(std::cout);
-          fs_.clear(std::cout.rdstate());
-          fs_.basic_ios<char>::rdbuf(std::cout.rdbuf());
-      } else {
-          if (!std::filesystem::exists(filename)) {
-              std::ofstream outfile(filename);
-              outfile.close();
-          }
-          overwrite ? fs_.open(filename, std::ios::trunc) : fs_.open(filename, std::ios::app);
+      : fs_(),
+        is_first_(true),
+        separator_(separator),
+        escape_seq_("\""),
+        special_chars_("\"") {
+    fs_.exceptions(std::ios::failbit | std::ios::badbit);
+    if (filename.empty()) {
+      fs_.copyfmt(std::cout);
+      fs_.clear(std::cout.rdstate());
+      fs_.basic_ios<char>::rdbuf(std::cout.rdbuf());
+    } else {
+      if (!std::filesystem::exists(filename)) {
+        std::ofstream outfile(filename);
+        outfile.close();
       }
+      overwrite ? fs_.open(filename, std::ios::trunc)
+                : fs_.open(filename, std::ios::app);
+    }
   }
 
-  ~csvFile() {
+  ~CSVFile() {
     flush();
     fs_.close();
   }
@@ -53,50 +57,52 @@ class csvFile {
     is_first_ = true;
   }
 
-  csvFile &operator<<(csvFile &(*val)(csvFile &)) { return val(*this); }
+  CSVFile& operator<<(CSVFile& (*val)(CSVFile&)) { return val(*this); }
 
-  csvFile &operator<<(const char *val) { return write(escape(val)); }
+  CSVFile& operator<<(const char* val) { return write(escape(val)); }
 
-  csvFile &operator<<(const std::string &val) { return write(escape(val)); }
+  CSVFile& operator<<(const std::string& val) { return write(escape(val)); }
 
-  template<typename T>
-  csvFile &operator<<(const T &val)
-  {
-      return write(val);
+  template <typename T>
+  CSVFile& operator<<(const T& val) {
+    return write(val);
   }
 
-  static std::vector<std::vector<std::string>> parse(const std::filesystem::path &csvFilepath)
-  {
-      std::vector<std::vector<std::string>> resultCSV;
-      if (!std::filesystem::exists(csvFilepath)) {
-          std::cerr << "The file does not exist:" << csvFilepath.string() << std::endl;
-          return resultCSV;
-      }
-
-      std::ifstream inputfile(csvFilepath.string().c_str());
-      if (!inputfile.is_open()) {
-          std::cerr << "Can't open file:" << csvFilepath.string() << std::endl;
-          return resultCSV;
-      }
-      std::vector<std::string> row;
-      std::string line;
-      using Tokenizer = boost::tokenizer<boost::escaped_list_separator<char>>;
-      while (std::getline(inputfile, line)) {
-          Tokenizer tokenizer(line);
-          const int numOfCols = std::distance(tokenizer.begin(), tokenizer.end());
-          row.resize(numOfCols);
-          std::copy(tokenizer.begin(), tokenizer.end(), row.begin());
-          //          std::transform(tokenizer.begin(), tokenizer.end(), row.begin(), [](const std::string &el) {
-          //              return boost::lexical_cast<T>(el);
-          //          });
-          resultCSV.push_back(row);
-      }
-
+  static std::vector<std::vector<std::string>> parse(
+      const std::filesystem::path& csvFilepath) {
+    std::vector<std::vector<std::string>> resultCSV;
+    if (!std::filesystem::exists(csvFilepath)) {
+      std::cerr << "The file does not exist:" << csvFilepath.string()
+                << std::endl;
       return resultCSV;
+    }
+
+    std::ifstream inputfile(csvFilepath.string().c_str());
+    if (!inputfile.is_open()) {
+      std::cerr << "Can't open file:" << csvFilepath.string() << std::endl;
+      return resultCSV;
+    }
+    std::vector<std::string> row;
+    std::string line;
+    using Tokenizer = boost::tokenizer<boost::escaped_list_separator<char>>;
+    while (std::getline(inputfile, line)) {
+      Tokenizer tokenizer(line);
+      const int numOfCols = std::distance(tokenizer.begin(), tokenizer.end());
+      row.resize(numOfCols);
+      std::copy(tokenizer.begin(), tokenizer.end(), row.begin());
+      //          std::transform(tokenizer.begin(), tokenizer.end(),
+      //          row.begin(), [](const std::string &el) {
+      //              return boost::lexical_cast<T>(el);
+      //          });
+      resultCSV.push_back(row);
+    }
+
+    return resultCSV;
   }
 
-private:
-  template <typename T> csvFile &write(const T &val) {
+ private:
+  template <typename T>
+  CSVFile& write(const T& val) {
     if (!is_first_) {
       fs_ << separator_;
     } else {
@@ -106,7 +112,7 @@ private:
     return *this;
   }
 
-  std::string escape(const std::string &val) {
+  std::string escape(const std::string& val) {
     std::ostringstream result;
     result << '"';
     std::string::size_type to, from = 0u, len = val.length();
@@ -120,14 +126,14 @@ private:
   }
 };
 
-inline static csvFile &endrow(csvFile &file) {
+inline static CSVFile& endrow(CSVFile& file) {
   file.endrow();
   return file;
 }
 
-inline static csvFile &flush(csvFile &file) {
+inline static CSVFile& flush(CSVFile& file) {
   file.flush();
   return file;
 }
 
-#endif // CSVFILE_HPP
+#endif  // CSVFILE_HPP
diff --git a/formFinder_unitTestFiles/Cylindrical/LongSpanGridshell_displacements.eigenBin b/formFinder_unitTestFiles/Cylindrical/LongSpanGridshell_displacements.eigenBin
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diff --git a/formFinder_unitTestFiles/Cylindrical/SimpleBeam_displacements.eigenBin b/formFinder_unitTestFiles/Cylindrical/SimpleBeam_displacements.eigenBin
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diff --git a/formFinder_unitTestFiles/longSpanGridshell.ply b/formFinder_unitTestFiles/Cylindrical/longSpanGridshell.ply
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diff --git a/formFinder_unitTestFiles/shortSpanGridshell.ply b/formFinder_unitTestFiles/Cylindrical/shortSpanGridshell.ply
similarity index 100%
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diff --git a/formFinder_unitTestFiles/simpleBeam.ply b/formFinder_unitTestFiles/Cylindrical/simpleBeam.ply
similarity index 100%
rename from formFinder_unitTestFiles/simpleBeam.ply
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diff --git a/formFinder_unitTestFiles/rectangularCrossSection/shortSpanGridshell.ply b/formFinder_unitTestFiles/rectangularCrossSection/shortSpanGridshell.ply
new file mode 100644
index 0000000..e25e0cd
--- /dev/null
+++ b/formFinder_unitTestFiles/rectangularCrossSection/shortSpanGridshell.ply
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+property float nx
+property float ny
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+element edge 24            { there are 6 "face" elements in the file }
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+property int vertex2
+property list uchar float beam_dimensions
+property list uchar float beam_material {poissons ratio , young's modulus in GPascal}
+end_header
+
+0 0 0 0 0 1
+1 0 0 0 0 1
+2 0 0 0 0 1
+3 0 0 0 0 1
+4 0 0 0 0 1
+0 1 0 0 0 1
+2 1 0 0 0 1
+4 1 0 0 0 1
+0 2 0 0 0 1
+1 2 0 0 0 1
+2 2 0 0 0 1
+3 2 0 0 0 1
+4 2 0 0 0 1
+0 3 0 0 0 1
+2 3 0 0 0 1
+4 3 0 0 0 1
+0 4 0 0 0 1
+1 4 0 0 0 1
+2 4 0 0 0 1
+3 4 0 0 0 1
+4 4 0 0 0 1
+
+0 1 2 0.03 0.026 2 0.3 200
+1 2 2 0.03 0.026 2 0.3 200
+2 3 2 0.03 0.026 2 0.3 200
+3 4 2 0.03 0.026 2 0.3 200
+
+0 5 2 0.03 0.026 2 0.3 200
+2 6 2 0.03 0.026 2 0.3 200
+4 7 2 0.03 0.026 2 0.3 200
+
+
+8 9 2 0.03 0.026 2 0.3 200
+9 10 2 0.03 0.026 2 0.3 200
+10 11 2 0.03 0.026 2 0.3 200
+11 12 2 0.03 0.026 2 0.3 200
+
+8 5 2 0.03 0.026 2 0.3 200
+10 6 2 0.03 0.026 2 0.3 200
+12 7 2 0.03 0.026 2 0.3 200
+
+8 13 2 0.03 0.026 2 0.3 200
+10 14 2 0.03 0.026 2 0.3 200
+12 15 2 0.03 0.026 2 0.3 200
+
+16 13 2 0.03 0.026 2 0.3 200
+18 14 2 0.03 0.026 2 0.3 200
+20 15 2 0.03 0.026 2 0.3 200
+
+16 17 2 0.03 0.026 2 0.3 200
+17 18 2 0.03 0.026 2 0.3 200
+18 19 2 0.03 0.026 2 0.3 200
+19 20 2 0.03 0.026 2 0.3 200
\ No newline at end of file
diff --git a/formFinder_unitTestFiles/rectangularCrossSection/simpleBeam.ply b/formFinder_unitTestFiles/rectangularCrossSection/simpleBeam.ply
new file mode 100644
index 0000000..5681759
--- /dev/null
+++ b/formFinder_unitTestFiles/rectangularCrossSection/simpleBeam.ply
@@ -0,0 +1,26 @@
+ply
+format ascii 1.0
+element vertex 5           { define "vertex" element, 8 of them in file }
+property float x           { vertex contains float "x" coordinate }
+property float y           { y coordinate is also a vertex property }
+property float z           { z coordinate, too }
+property float nx
+property float ny
+property float nz
+element edge 4            { there are 6 "face" elements in the file }
+property int vertex1
+property int vertex2
+property list uchar float beam_dimensions
+property list uchar float beam_material {poissons ratio , young's modulus in GPascal}
+end_header
+
+0 0 0 0 0 1
+1 0 0 0 0 1
+2 0 0 0 0 1
+3 0 0 0 0 1
+4 0 0 0 0 1
+
+0 1 2 0.03 0.026 2 0.3 200
+1 2 2 0.03 0.026 2 0.3 200
+2 3 2 0.03 0.026 2 0.3 200
+3 4 2 0.03 0.026 2 0.3 200