forked from ISTI-ansible-roles/ansible-roles
library/roles/R/tasks/main.yml: better test for the task that installs specific versions of the R library packages.
library/roles/R/tasks/main.yml: implement packages removal. d4science-ghn-cluster/roles/dataminer_app/tasks/main.yml: Cleanup the pom dependencies mess.
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@ -88,6 +88,6 @@ r_plugins_list_to_install:
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# - { plugin_name: 'RFigisGeo', github_user: 'openfigis' }
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# - { plugin_name: 'rsdmx', github_user: 'opensdmx' }
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# Plugins removal not yet implemented
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#
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#r_plugins_list_to_remove:
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@ -24,28 +24,28 @@
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when: r_needs_additional_distro_pkgs
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tags: [ 'r_software', 'r_pkg' ]
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- name: Ensure that the R plugin sources directory exists
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- name: Ensure that the R packages sources directory exists
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file: dest={{ r_source_plugins_dest_dir }} state=directory owner=root group=root
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when: r_plugins_from_sources is defined
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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- name: Get the R plugin sources that need to be installed
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- name: Get the R packages sources that need to be installed
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get_url: url={{ item.url }} dest={{ r_source_plugins_dest_dir }}
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with_items: r_plugins_from_sources
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when: r_plugins_from_sources is defined
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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- name: Install R plugins from the cran sources, specific versions
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- name: Install R packages from the cran sources, specific versions
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command: >
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Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
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Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
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register: install_s_plugins_result
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failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
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changed_when: "'Added' in install_s_plugins_result.stdout"
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changed_when: '"Added" in install_s_plugins_result.stdout'
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with_items: r_plugins_from_sources
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when: r_plugins_install_specific_source
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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- name: Install R plugins from the cran sources repo, latest version
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- name: Install R packages from the cran sources repo, latest version
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command: >
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Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { install.packages(pkgs='{{ item }}', repos=c('{{ r_cran_mirror_site }}/')); print('Added'); } else { print('Already installed'); }"
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register: install_plugins_result
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@ -55,13 +55,22 @@
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when: r_plugins_install_latest_source
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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- name: Install R plugins from github
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- name: Install R packages from github
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command: >
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Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.plugin_name }}' %in% installed.packages()[,'Package'])) { require(devtools); require(methods) ; options(repos='{{ r_cran_mirror_site }}/') ; install_github('{{ item.plugin_name }}', '{{ item.github_user }}'); print('Added'); } else { print('Already Installed'); }"
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register: install_s_plugins_result
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failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
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changed_when: "'Added' in install_s_plugins_result.stdout"
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register: install_github_plugins_result
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failed_when: "install_github_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
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changed_when: "'Added' in install_github_plugins_result.stdout"
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with_items: r_plugins_from_github
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when: r_plugins_from_github is defined
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_github' ]
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- name: Remove R unwanted packages
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command: >
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Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { print('Not installed'); } else { remove.packages(pkgs='{{ item }}'); print('Removed'); }"
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register: remove_plugins_result
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failed_when: remove_plugins_result.rc != 0
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changed_when: "'Removed' in remove_plugins_result.stdout"
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with_items: r_plugins_list_to_remove
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when: r_plugins_list_to_remove is defined
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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