diff --git a/smartgears/dataminer_app/defaults/main.yml b/smartgears/dataminer_app/defaults/main.yml index b6147d85..a69cb1fd 100644 --- a/smartgears/dataminer_app/defaults/main.yml +++ b/smartgears/dataminer_app/defaults/main.yml @@ -2,80 +2,10 @@ dataminer_app_install: False dataminer_app_upgrade: False +# dev or prod +dataminer_product: prod +dataminer_zip_url: 'http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/DataMinerConfiguration/webapp/{{ dataminer_product }}/wps.zip' + dataminer_52north_webapp_name: wps -dataminer_52north_webapp_context: '/{{ dataminer_52north_webapp_name }}' - -dataminer_52north_webapp_file: 52n-wps-webapp-3.3.2-20150523.010021-9.war -#dataminer_52north_webapp_url: 'http://build.dev.52north.org/jenkins/view/Processing/job/52n-wps_GIT-DEV_nightly_builds/lastSuccessfulBuild/org.n52.wps$52n-wps-webapp/artifact/org.n52.wps/52n-wps-webapp/3.3.2-20150523.010021-9/{{ dataminer_52north_webapp_file }}' -dataminer_52north_webapp_url: 'http://data.d4science.org/uri-resolver/id?fileName=wps-3.3.2.war&smp-id=565d67b7e4b0eacf4a0fc5ad&contentType=application%2Fx-tika-java-web-archive' -dataminer_maven_enable_gcube_snapshots: False -dataminer_maven_enable_gcube_staging: False -dataminer_dataminer_jar_version: 1.2.0-4.0.0-129209 - -#dataminer_dataminer_jar_version_range: "[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)" -dataminer_dataminer_jar_version_range: '{{ dataminer_dataminer_jar_version }}' - -dataminer_gcube_web_xml: "http://data.d4science.org/id?fileName=web.xml&smp-id=56615ae0e4b0158fcb561817&contentType=application%2Fxml" -dataminer_gcube_app_xml: "http://data.d4science.org/id?fileName=gcube-app.xml&smp-id=56615ae0e4b0158fcb561815&contentType=application%2Fxml" - -dataminer_additional_jars_urls: - - 'http://data.d4science.org/dU50M0VvS1RuV2xrMXBkVER6VzVEYUtoSWhEVFdCWXFHbWJQNStIS0N6Yz0' - - 'http://data.d4science.org/OVd0bVZaVlpSdDFrMXBkVER6VzVEU1ZnMmcvYWFrb2tHbWJQNStIS0N6Yz0' - -dataminer_jars_to_remove: - - 52n-wps-client-lib-3.2.0.jar - - 52n-wps-io-impl-3.3.1.jar - - 52n-wps-database-3.3.1.jar - - 52n-wps-server-3.3.1.jar - - 52n-wps-algorithm-3.3.1.jar - - 52n-wps-commons-3.3.1.jar - - 52n-wps-io-3.3.1.jar - - 52n-wps-server-3.3.2-SNAPSHOT.jar - - 52n-wps-algorithm-3.3.2-SNAPSHOT.jar - - 52n-wps-algorithm-3.4.0.jar - - 52n-wps-server-3.3.2.jar - - 52n-wps-server-3.4.0.jar - - 52n-wps-algorithm-3.4.0.jar - - 52n-wps-commons-3.4.0.jar - - 52n-wps-database-3.4.0.jar - - 52n-wps-io-3.4.0.jar - - 52n-wps-io-impl-3.4.0.jar - - 52n-wps-algorithm-3.5.0.jar - - 52n-wps-commons-3.5.0.jar - - 52n-wps-database-3.5.0.jar - - 52n-wps-io-3.5.0.jar - - 52n-wps-io-impl-3.5.0.jar - - 52n-wps-server-3.5.0.jar - - commons-beanutils-1.7.0.jar - - dom4j-1.6.jar - - jaxen-1.1.1.jar - - jcl-over-slf4j-1.6.4.jar - - log4j-over-slf4j-1.7.5.jar - - jdom-1.0.jar - - logback-core-1.0.13.jar - - slf4j-api-1.7.5.jar - - spring-beans-2.0.6.jar - - spring-context-2.0.6.jar - - spring-core-2.0.6.jar - - registry-publisher-1.2.5-3.10.0.jar - - -dataminer_ecocfg_svn_repo: 'http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/DataMinerConfiguration/cfg' - -dataminer_ecocfg_parallelproc_svn_repo: 'http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/DataMinerConfiguration/PARALLEL_PROCESSING' - -# Retrieve and modify in a template before each installation. -dataminer_wps_config: 'http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/DataMinerConfiguration/wpscfg/wps_config.xml' - -dataminer_configuration_jar: 'dataminer-algorithms.jar' -dataminer_configuration_jar_url: 'http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/DataMinerConfiguration/algorithms/{{ dataminer_configuration_jar }}' dataminer_data_file_from_thredds: 'http://thredds.d4science.org/thredds/fileServer/public/netcdf/gebco_08_OCEANS_CLIMATOLOGY_METEOROLOGY_ATMOSPHERE_.nc' - -dataminer_algorithms_repo: 'http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/DataMinerConfiguration/algorithms' - -# Those packages are needed to download and configure the dataminer application -dataminer_additional_packages: - - subversion - - maven - diff --git a/smartgears/dataminer_app/tasks/dataminer-app.yml b/smartgears/dataminer_app/tasks/dataminer-app.yml index 3862781d..ecfde329 100644 --- a/smartgears/dataminer_app/tasks/dataminer-app.yml +++ b/smartgears/dataminer_app/tasks/dataminer-app.yml @@ -1,149 +1,24 @@ --- -- name: Install some packages needed to download the dataminer environment - apt: pkg={{ item }} state=present - with_items: '{{ dataminer_additional_packages }}' - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer' ] +- block: + - name: Get and unpack the dataminer application + unarchive: src={{ dataminer_zip_url }} dest={{ smartgears_instance_path }}/webapps copy=no + notify: Restart smartgears + + - name: Install the gebco_08.nc file from thredds. It is big, mostly 2GB + get_url: url={{ dataminer_data_file_from_thredds }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/ecocfg/gebco_08.nc + notify: Restart smartgears -- name: Ensure that the maven configuration directory exists for the smartgears user + - name: Install the script that fixes the WPS configuration + become: False + template: src=wps-config-fixer.j2 dest=/usr/local/bin/wps-config-fixer owner=root group=root mode=0555 + with_items: '{{ tomcat_m_instances }}' + + - name: Fix the WPS config file + shell: /usr/local/bin/wps-config-fixer +# notify: Restart smartgears + become: True become_user: '{{ smartgears_user }}' - file: path={{ smartgears_user_home }}/.m2 state=directory mode=0755 - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Create a directory where to install the pom file needed to download the dataminer jar - become: True - become_user: '{{ smartgears_user }}' - file: path={{ smartgears_user_home }}/.m2/dataminer state=directory mode=0755 - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install the maven configuration - become: True - become_user: '{{ smartgears_user }}' - template: src=maven-settings.xml.j2 dest={{ smartgears_user_home }}/.m2/settings.xml mode=0640 - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install a fake maven POM file to download the dataminer app dependencies - become: True - become_user: '{{ smartgears_user }}' - template: src=pom.xml.j2 dest={{ smartgears_user_home }}/.m2/pom.xml mode=0640 - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install a fake maven POM file to download the dataminer jar - become: True - become_user: '{{ smartgears_user }}' - template: src=dataminer-pom.xml.j2 dest={{ smartgears_user_home }}/.m2/dataminer/pom.xml mode=0640 - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install the rapidminer-custom jar - become: True - become_user: '{{ smartgears_user }}' - shell: mvn org.apache.maven.plugins:maven-dependency-plugin:2.8:copy -Dartifact=rapidminer-custom:52n-wps-server:3.3.2 -DoutputDirectory={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib - args: - creates: '{{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/52n-wps-server-3.3.2.jar' - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install the org.gcube.dataanalysis dataminer jar - become: True - become_user: '{{ smartgears_user }}' - shell: cd {{ smartgears_user_home }}/.m2/dataminer ; mvn org.apache.maven.plugins:maven-dependency-plugin:2.8:copy -Dartifact=org.gcube.dataanalysis:dataminer:{{ dataminer_dataminer_jar_version }} -DoutputDirectory={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib - args: - creates: '{{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/dataminer-{{ dataminer_dataminer_jar_version }}.jar' - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install the org.gcube.dataanalysis dataminer jar dependencies - become: True - become_user: '{{ smartgears_user }}' - shell: cd {{ smartgears_user_home }}/.m2 ; mvn -DexcludeScope=provided org.apache.maven.plugins:maven-dependency-plugin:2.8:copy-dependencies -Dartifact=org.gcube.dataanalysis:dataminer:{{ dataminer_dataminer_jar_version }} -DoutputDirectory={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib - args: - creates: '{{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/ecological-engine-1.8.6-3.9.0.jar' - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install the 52n jars modified by D4Science - become: True - become_user: '{{ smartgears_user }}' - get_url: url={{ item }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/ - with_items: '{{ dataminer_additional_jars_urls }}' - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps', 'dataminer_new_jars' ] - -- name: Remove the unwanted jars from the 52 north webapp distribution and from the org.gcube.dataanalysis dataminer dependencies - become: True - become_user: '{{ smartgears_user }}' - file: dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/{{ item }} state=absent - with_items: '{{ dataminer_jars_to_remove }}' - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps', 'dataminer_deps_cleanup' ] - -- name: Download the ecocfg config from subversion - become: True - become_user: '{{ smartgears_user }}' - subversion: repo={{ dataminer_ecocfg_svn_repo }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/ecocfg force=yes - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Download the ecocfg parallel processing libraries from subversion - become: True - become_user: '{{ smartgears_user }}' - subversion: repo={{ dataminer_ecocfg_parallelproc_svn_repo }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/ecocfg/PARALLEL_PROCESSING force=yes - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Install the gebco_08.nc file from thredds. It is big, mostly 2GB - become: True - become_user: '{{ smartgears_user }}' - get_url: url={{ dataminer_data_file_from_thredds }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/ecocfg/gebco_08.nc - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Download the dataminer algorithms jars from subversion - become: True - become_user: '{{ smartgears_user }}' - subversion: repo={{ dataminer_algorithms_repo }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/.algorithms - notify: Restart smartgears - register: dataminer_algorithms - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps', 'wps_algorithms' ] - -- name: Move the dataminer algorithms jars to the right place - become: True - become_user: '{{ smartgears_user }}' - shell: cd {{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib ; mv {{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/.algorithms/*.jar . - notify: Restart smartgears - when: - - dataminer_app_install - - ( dataminer_algorithms | changed ) - tags: [ 'tomcat', 'dataminer', 'wps', 'wps_algorithms' ] - -- name: Install the wps config file - become: True - become_user: '{{ smartgears_user }}' - template: src=wps_config.xml.j2 dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/config/wps_config.xml mode=0444 - notify: Restart smartgears - when: dataminer_app_install - tags: [ 'tomcat', 'dataminer', 'wps' ] - -- name: Download the dataminer config jar - become: True - become_user: '{{ smartgears_user }}' - get_url: url={{ dataminer_configuration_jar_url }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib/{{ dataminer_configuration_jar }} force=yes - notify: Restart smartgears when: dataminer_app_install tags: [ 'tomcat', 'dataminer', 'wps' ] diff --git a/smartgears/dataminer_app/tasks/dataminer-upgrade.yml b/smartgears/dataminer_app/tasks/dataminer-upgrade.yml index 4a41894a..e459da47 100644 --- a/smartgears/dataminer_app/tasks/dataminer-upgrade.yml +++ b/smartgears/dataminer_app/tasks/dataminer-upgrade.yml @@ -1,11 +1,10 @@ --- -- name: If it is an upgrade, shut down the server - service: name=tomcat-instance-{{ smartgears_http_port }} state=stopped - when: dataminer_app_upgrade - tags: [ 'tomcat', 'dataminer', 'dataminer_upgrade' ] +- block: + - name: If it is an upgrade, shut down the server + service: name=tomcat-instance-{{ smartgears_http_port }} state=stopped -- name: If it is an upgrade, brutally remove the wps installation - file: dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }} state=absent - when: dataminer_app_upgrade - tags: [ 'tomcat', 'dataminer', 'dataminer_upgrade' ] + - name: If it is an upgrade, brutally remove the wps installation + file: dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }} state=absent + when: dataminer_app_upgrade + tags: [ 'tomcat', 'dataminer', 'dataminer_upgrade', 'wps' ] diff --git a/smartgears/dataminer_app/tasks/install-gcube-key.yml b/smartgears/dataminer_app/tasks/install-gcube-key.yml index 8644d074..31297f17 100644 --- a/smartgears/dataminer_app/tasks/install-gcube-key.yml +++ b/smartgears/dataminer_app/tasks/install-gcube-key.yml @@ -7,7 +7,7 @@ - '{{ gcube_prod_key_3 }}' notify: Restart smartgears when: install_gcube_prod_key - tags: [ 'dataminer', 'gcube_key' ] + tags: [ 'dataminer', 'gcube_key', 'wps' ] - name: Install the devel gcube keys get_url: url={{ item.url }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/ecocfg/PARALLEL_PROCESSING owner={{ smartgears_user }} group={{ smartgears_user }} mode=0400 @@ -17,7 +17,7 @@ - '{{ gcube_dev_key_3 }}' notify: Restart smartgears when: install_gcube_dev_key - tags: [ 'dataminer', 'gcube_key' ] + tags: [ 'dataminer', 'gcube_key', 'wps' ] - name: Install the preprod gcube keys get_url: url={{ item.url }} dest={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/ecocfg/PARALLEL_PROCESSING owner={{ smartgears_user }} group={{ smartgears_user }} mode=0400 @@ -25,4 +25,4 @@ - '{{ gcube_pre_key_1 }}' notify: Restart smartgears when: install_gcube_preprod_key - tags: [ 'dataminer', 'gcube_key' ] + tags: [ 'dataminer', 'gcube_key', 'wps' ] diff --git a/smartgears/dataminer_app/tasks/main.yml b/smartgears/dataminer_app/tasks/main.yml index a18b39bd..7241d0bc 100644 --- a/smartgears/dataminer_app/tasks/main.yml +++ b/smartgears/dataminer_app/tasks/main.yml @@ -1,6 +1,5 @@ --- - include: dataminer-upgrade.yml when: dataminer_app_upgrade -- include: w52n-app.yml - include: dataminer-app.yml - include: install-gcube-key.yml diff --git a/smartgears/dataminer_app/templates/dataminer-pom.xml.j2 b/smartgears/dataminer_app/templates/dataminer-pom.xml.j2 deleted file mode 100644 index ce1c4fdd..00000000 --- a/smartgears/dataminer_app/templates/dataminer-pom.xml.j2 +++ /dev/null @@ -1,15 +0,0 @@ - - - 4.0.0 - org.gcube - dataminer - jar - {{ dataminer_dataminer_jar_version_range }} - - - org.gcube.dataanalysis - dataminer - {{ dataminer_dataminer_jar_version_range }} - - - diff --git a/smartgears/dataminer_app/templates/download-dataminer.sh.j2 b/smartgears/dataminer_app/templates/download-dataminer.sh.j2 new file mode 100644 index 00000000..04c513e3 --- /dev/null +++ b/smartgears/dataminer_app/templates/download-dataminer.sh.j2 @@ -0,0 +1,39 @@ +#!/bin/bash + +RETVAL= + +cd {{ smartgears_user_home }} +# Install the rapidminer custom jar +mvn org.apache.maven.plugins:maven-dependency-plugin:2.8:copy -Dartifact=rapidminer-custom:52n-wps-server:3.3.2 -DoutputDirectory={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib + +RETVAL=$? +if [ $RETVAL -ne 0 ] ; then + exit 1 +fi + +# Install the org.gcube.dataanalysis dataminer jar +{% if dataminer_jar_url is defined %} +cd {{ smartgears_user_home }}/tomcat/webapps/wps/WEB-INF/lib +wget {{ dataminer_jar_url }} +{% else %} +cd {{ smartgears_user_home }}/.m2/dataminer +mvn org.apache.maven.plugins:maven-dependency-plugin:2.8:copy -Dartifact=org.gcube.dataanalysis:dataminer:{{ dataminer_dataminer_jar_version }} -DoutputDirectory={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib +{% endif %} + +RETVAL=$? +if [ $RETVAL -ne 0 ] ; then + exit 1 +fi + +# Install the org.gcube.dataanalysis dataminer jar dependencies +cd {{ smartgears_user_home }}/.m2 +mvn -DexcludeScope=provided org.apache.maven.plugins:maven-dependency-plugin:2.8:copy-dependencies -Dartifact=org.gcube.dataanalysis:dataminer:{{ dataminer_dataminer_jar_version }} -DoutputDirectory={{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/WEB-INF/lib + + +RETVAL=$? +if [ $RETVAL -ne 0 ] ; then + exit 1 +fi + +touch {{ smartgears_user_home }}/.dataminer_installation_{{ dataminer_dataminer_jar_version }} +exit 0 diff --git a/smartgears/dataminer_app/templates/maven-settings.xml.j2 b/smartgears/dataminer_app/templates/maven-settings.xml.j2 deleted file mode 100644 index 5fa86203..00000000 --- a/smartgears/dataminer_app/templates/maven-settings.xml.j2 +++ /dev/null @@ -1,123 +0,0 @@ - - - - - gcube-snapshots - - - - - - - gcube - - {% if dataminer_maven_enable_gcube_snapshots %} - - gcube-snapshots - gCube Snapshots - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-snapshots - - false - - - true - - - {% endif %} - {% if dataminer_maven_enable_gcube_staging %} - - gcube-staging - gCube Staging - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-staging - - false - - - true - - - {% endif %} - - gcube-releases - gCube Releases - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-releases - - false - - - true - - - - gcube-externals - gCube Externals - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-externals - - false - - - true - - - - - - {% if dataminer_maven_enable_gcube_snapshots %} - - gcube-snapshots - gCube Snapshots - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-snapshots - - false - - - true - - - {% endif %} - {% if dataminer_maven_enable_gcube_staging %} - - gcube-staging - gCube Staging - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-staging - - false - - - true - - - {% endif %} - - gcube-releases - gCube Releases - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-releases - - false - - - true - - - - gcube-externals - gCube Externals - http://maven.research-infrastructures.eu/nexus/content/repositories/gcube-externals - - false - - - true - - - - - - - - - gcube - - - diff --git a/smartgears/dataminer_app/templates/pom.xml.j2 b/smartgears/dataminer_app/templates/pom.xml.j2 deleted file mode 100644 index a8db614a..00000000 --- a/smartgears/dataminer_app/templates/pom.xml.j2 +++ /dev/null @@ -1,295 +0,0 @@ - - 4.0.0 - - maven-parent - org.gcube.tools - 1.0.0 - - - org.gcube.dataanalysis - dataminer - {{ dataminer_dataminer_jar_version }} - dataminer - dataminer - - ${project.basedir}/distro - - - - org.gcube.dataaccess.algorithms - database-rm-algorithms - [1.0.0-SNAPSHOT,1.4.0-SNAPSHOT) - - - slf4j-api - org.slf4j - - - common-encryption - org.gcube.core - - - common-scope-maps - org.gcube.core - - - - - ch.qos.logback - logback-classic - 1.1.2 - - - org.n52.wps - 52n-wps-io - [3.3.1,4.0.0) - - - slf4j-api - org.slf4j - - - - - org.n52.wps - 52n-wps-io-impl - [3.3.1,4.0.0) - - - slf4j-api - org.slf4j - - - - - org.n52.wps - 52n-wps-algorithm - [3.3.1,4.0.0) - - - slf4j-api - org.slf4j - - - - - org.n52.wps - 52n-wps-server - [3.3.1,4.0.0) - - - slf4j-api - org.slf4j - - - - - - org.gcube.dataanalysis - ecological-engine-wps-extension - [1.0.2-SNAPSHOT,2.0.0-SNAPSHOT) - - - slf4j-api - org.slf4j - - - - - org.gcube.dataanalysis - ecological-engine-geospatial-extensions - [1.3.2-SNAPSHOT,2.0.0-SNAPSHOT) - - - slf4j-api - org.slf4j - - - common-scope-maps - org.gcube.core - - - common-encryption - org.gcube.core - - - - - org.gcube.dataanalysis - ecological-engine-external-algorithms - [1.1.5-SNAPSHOT,2.0.0-SNAPSHOT) - - - slf4j-api - org.slf4j - - - common-utils-encryption - org.gcube.core - - - common-encryption - org.gcube.core - - - - - - org.gcube.dataanalysis - ecological-engine-smart-executor - [1.0.0-SNAPSHOT,2.0.0-SNAPSHOT) - - - slf4j-api - org.slf4j - - - - - - org.slf4j - slf4j-nop - 1.7.10 - - - slf4j-api - org.slf4j - - - - - junit - junit - 4.11 - - - - org.gcube.common - common-authorization - [1.0.0-SNAPSHOT,2.0.0-SNAPSHOT) - provided - - - slf4j-api - org.slf4j - - - common-utils-encryption - org.gcube.core - - - - - org.gcube.core - common-scope - [1.2.0-SNAPSHOT,2.0.0-SNAPSHOT) - provided - - - slf4j-api - org.slf4j - - - - - javassist - javassist - 3.12.1.GA - - - org.gcube.common - home-library-jcr - [2.0.0-SNAPSHOT,3.0.0-SNAPSHOT) - - - - org.gcube.common - home-library - [2.0.0-SNAPSHOT,3.0.0-SNAPSHOT) - - - - - - maven-compiler-plugin - 3.1 - - 1.6 - 1.6 - - - - org.apache.maven.plugins - maven-surefire-plugin - 2.18.1 - - true - - - - org.apache.maven.plugins - maven-resources-plugin - 2.7 - - - copy-profile - install - - copy-resources - - - target - - - ${distroDirectory} - true - - profile.xml - - - - - - - - - org.apache.maven.plugins - maven-assembly-plugin - 2.5.3 - - - ${distroDirectory}/descriptor.xml - - - - - servicearchive - install - - single - - - - - - - - - n52-releases - 52n Releases - http://52north.org/maven/repo/releases - - true - - - false - - - - diff --git a/smartgears/dataminer_app/templates/wps-config-fixer.j2 b/smartgears/dataminer_app/templates/wps-config-fixer.j2 new file mode 100644 index 00000000..d0d4a00f --- /dev/null +++ b/smartgears/dataminer_app/templates/wps-config-fixer.j2 @@ -0,0 +1,26 @@ +#!/bin/bash + +# +WPS_CONFIG_FILE='{{ smartgears_instance_path }}/webapps/{{ dataminer_52north_webapp_name }}/config/wps_config.xml' + +# Fix the hostname +sed -Ei 's/hostname=\".*\"\ hostport/hostname="{{ ansible_fqdn }}" hostport/' $WPS_CONFIG_FILE + +# Fix the port +{%if setup_nginx %} +{% if https_port is defined %} +{% if http_redirect_to_https is defined and http_redirect_to_https %} +sed -Ei 's/hostport=\".*\"\ includeDataInputsInResponse/hostport="{{ https_port }}" includeDataInputsInResponse/' $WPS_CONFIG_FILE +{% else %} +sed -Ei 's/hostport=\".*\"\ includeDataInputsInResponse/hostport="{{ http_port }}" includeDataInputsInResponse/' $WPS_CONFIG_FILE +{% endif %} +{% else %} +{%if http_port is defined %} +sed -Ei 's/hostport=\".*\"\ includeDataInputsInResponse/hostport="{{ http_port }}" includeDataInputsInResponse/' $WPS_CONFIG_FILE +{% endif %} +{% endif %} +{% else %} +sed -Ei 's/hostport=\".*\"\ includeDataInputsInResponse/hostport="{{ item.http_port }}" includeDataInputsInResponse/' $WPS_CONFIG_FILE +{% endif %} + +exit 0 diff --git a/smartgears/dataminer_app/templates/wps_config.xml.j2 b/smartgears/dataminer_app/templates/wps_config.xml.j2 deleted file mode 100644 index c74258d4..00000000 --- a/smartgears/dataminer_app/templates/wps_config.xml.j2 +++ /dev/null @@ -1,158 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -org.n52.wps.demo.TestIO -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_GENERATION_FROM_OBIS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEC -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCES_DUPLICATES_DELETER -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCES_INTERSECTOR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCES_MARINE_TERRESTRIAL -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCES_MERGER -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCES_SUBTRACTION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_INTERPOLATION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MOST_OBSERVED_SPECIES -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MOST_OBSERVED_TAXA -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_OBSERVATIONS_PER_AREA -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_OBSERVATIONS_TREND_PER_YEAR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_OBSERVATION_LME_AREA_PER_YEAR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_OBSERVATION_MEOW_AREA_PER_YEAR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TAXONOMY_OBSERVATIONS_TREND_PER_YEAR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GETTABLEDETAILS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBINFO -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBNAMES -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTDBSCHEMA -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.LISTTABLES -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RANDOMSAMPLEONTABLE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SAMPLEONTABLE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SMARTSAMPLEONTABLE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.KNITR_COMPILER -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SEADATANET_INTERPOLATOR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.POLYGONS_TO_MAP -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_MAP_FROM_CSQUARES -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_MAP_FROM_POINTS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.POINTS_TO_MAP -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARES_TO_COORDINATES -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GRID_CWP_TO_COORDINATES -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.EGIP_ENERGY_AGGREGATED_DISTRIBUTION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.EGIP_ENERGY_COUNTRY_DISTRIBUTION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.EGIP_ENERGY_TRENDS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.EGIP_ENERGY_YEAR_DISTRIBUTION -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ECOPATH_WITH_ECOSIM -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESTIMATE_FISHING_ACTIVITY -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESTIMATE_MONTHLY_FISHING_EFFORT -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.WEB_APP_PUBLISHER -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.modellers.AQUAMAPSNN -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.LWR -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.modellers.HSPEN -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.modellers.FEED_FORWARD_ANN -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM_BIODIV -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.AQUAMAPS_NATIVE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.AQUAMAPS_NATIVE_2050 -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.AQUAMAPS_SUITABLE -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.AQUAMAPS_SUITABLE_2050 -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.FAOMSY -org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.FEED_FORWARD_A_N_N_DISTRIBUTION - - - - - - - - -