forked from ISTI-ansible-roles/ansible-roles
library/roles/R/tasks/r-installation.yml: Fix a mistake from the previous modifications, make the tasks compliant with ansible 2.x
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@ -9,26 +9,26 @@
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- name: Remove the hold state from the debian R packages
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shell: apt-mark unhold {{ item }}
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with_items: r_base_packages_hold_list
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with_items: '{{ r_base_packages_hold_list }}'
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when: r_base_packages_hold_list is defined
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ignore_errors: True
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tags: [ 'r_software', 'r_pkg', 'r_pkg_hold' ]
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- name: Install the R base packages.
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apt: pkg={{ item }} state={{ r_packages_main_state }} force=yes update_cache=yes cache_valid_time=3600
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with_items: r_base_packages_list
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with_items: '{{ r_base_packages_list }}'
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tags: [ 'r_software', 'r_pkg' ]
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- name: When we install specific R deb packages, put them on hold
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shell: apt-mark hold {{ item }}
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with_items: r_base_packages_hold_list
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with_items: '{{ r_base_packages_hold_list }}'
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when: r_base_specific_version
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ignore_errors: True
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tags: [ 'r_software', 'r_pkg', 'r_pkg_hold' ]
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- name: Install the R additional modules from the deb repo
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apt: pkg={{ item }} state={{ r_packages_state }} force=yes
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with_items: r_plugins_packages_list
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with_items: '{{ r_plugins_packages_list }}'
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when: r_plugins_from_deb
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tags: [ 'r_software', 'r_pkg' ]
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@ -39,7 +39,7 @@
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- name: Install some packages needed by R packages when installed from source
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apt: pkg={{ item }} state={{ r_packages_state }} update_cache=yes force=yes
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with_items: r_distribution_required_packages
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with_items: '{{ r_distribution_required_packages }}'
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when: r_needs_additional_distro_pkgs
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tags: [ 'r_software', 'r_pkg' ]
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@ -54,26 +54,25 @@
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register: install_plugins_result
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failed_when: "install_plugins_result.rc != 0 or 'had non-zero exit status' in install_plugins_result.stderr"
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changed_when: "'Added' in install_plugins_result.stdout"
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with_items: r_plugins_list_to_install
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with_items: '{{ r_plugins_list_to_install }}'
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when: r_plugins_install_latest_source
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ignore_errors: True
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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- name: Get the R packages sources that need to be installed
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get_url: url={{ item.url }} dest={{ r_source_plugins_dest_dir }}
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with_items: r_plugins_from_sources
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with_items: '{{ r_plugins_from_sources }}'
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when: r_plugins_install_specific_source
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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- name: Install R packages from the cran sources, specific versions
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- name: Install R packages from the cran sources, specific versions. First try
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command: >
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Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
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register: install_s_plugins_result
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failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
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changed_when: '"Added" in install_s_plugins_result.stdout'
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with_items: r_plugins_from_sources
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with_items: '{{ r_plugins_from_sources }}'
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when: r_plugins_install_specific_source
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register: r_packages_specific_source
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ignore_errors: True
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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@ -83,7 +82,7 @@
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register: install_s_plugins_result
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failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
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changed_when: '"Added" in install_s_plugins_result.stdout'
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with_items: r_plugins_from_sources
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with_items: '{{ r_plugins_from_sources }}'
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when:
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- r_plugins_install_specific_source
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- "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
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@ -95,7 +94,7 @@
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register: install_plugins_result
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failed_when: "install_plugins_result.rc != 0 or 'had non-zero exit status' in install_plugins_result.stderr"
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changed_when: "'Added' in install_plugins_result.stdout"
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with_items: r_plugins_list_to_install
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with_items: '{{ r_plugins_list_to_install }}'
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when:
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- r_plugins_install_latest_source
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- "install_plugins_result.rc != 0 or 'had non-zero exit status' in install_plugins_result.stderr"
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@ -107,7 +106,7 @@
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register: install_github_plugins_result
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failed_when: "install_github_plugins_result.rc != 0 or 'had non-zero exit status' in install_github_plugins_result.stderr"
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changed_when: "'Added' in install_github_plugins_result.stdout"
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with_items: r_plugins_from_github
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with_items: '{{ r_plugins_from_github }}'
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when: r_plugins_from_github is defined
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_github' ]
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@ -117,6 +116,6 @@
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register: remove_plugins_result
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failed_when: remove_plugins_result.rc != 0
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changed_when: "'Removed' in remove_plugins_result.stdout"
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with_items: r_plugins_list_to_remove
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with_items: '{{ r_plugins_list_to_remove }}'
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when: r_plugins_list_to_remove is defined
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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