Commit Graph

188 Commits

Author SHA1 Message Date
Alejandro Moreo Fernandez 6e83bbef67 log the underlying ImportError when bayesian deps fail to import
Swallowing the exception made it impossible to tell which of
jax/numpyro/stan actually failed in CI.
2026-07-17 17:06:33 +02:00
Alejandro Moreo 8b0327f00a added EDx and improve doc 2026-07-07 15:46:45 +02:00
Alejandro Moreo 4bfa212459 adding EDy and improved manuals 2026-07-06 17:30:42 +02:00
Alejandro Moreo 574fc61032 improving doc manuals and added bonferroni parameter to interval construction 2026-07-06 12:11:24 +02:00
Alejandro Moreo Fernandez b29966797a Fix 10 correctness bugs and clean up warnings/logging in core library
Correctness:
- OneVsAllAggregative.aggregation_fit: fix undefined variable and call to
  the nonexistent aggregate_fit (should be aggregation_fit)
- solve_adjustment: stop mutating the caller's fitted arrays in place for
  method='invariant-ratio'
- LabelledCollection.join(): fix classes always being None due to
  ndarray.sort() returning None; now unions each collection's own classes_
  so a class absent from a particular join is kept at zero prevalence
- Rename the duplicate newSVMKLD (nkld variant) to newSVMNKLD so both loss
  variants are reachable
- EMQ/DyS/DMy: resolve n_jobs via qp._get_njobs() like the other methods,
  so qp.environ['N_JOBS'] is respected
- AggregativeMedianEstimator: drop backend='threading' (global np.random
  state mutated via temp_seed is not thread-safe); use the safe process
  based default instead
- NeuralClassifier: default device now 'cpu', matching its own docstring
- ConfidenceEllipseSimplex: narrow bare except to np.linalg.LinAlgError
- SVMperf: stop merging stderr into stdout so failures report the actual
  subprocess error instead of crashing with AttributeError
- ConfidenceRegionABC: replace @lru_cache on bound methods (leaked every
  instance for the process lifetime) with per-instance caching

Style/quality:
- Replace print() with warnings.warn()/logging across aggregative.py,
  base.py, meta.py, model_selection.py, classification/neural.py,
  method/_neural.py, classification/svmperf.py, data/reader.py,
  data/datasets.py; also fixes a `raise RuntimeWarning(...)` in EMQ that
  would have crashed instead of warning
- Remove dead duplicate class MedianEstimator2 in meta.py
- Rename misleading _compute_tpr(TP, FP) parameter to FN, matching what
  callers actually pass
- Replace argparse.ArgumentError misuse with ValueError
- Remove commented-out dead code in protocol.py
- _lequa.py: fix CSV-parse failure raising an unrelated UnboundLocalError
  instead of a clear ValueError

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
2026-07-04 18:49:44 +02:00
Alejandro Moreo f6c822ca8f improving docs and new example for image datasets 2026-07-03 17:07:02 +02:00
Alejandro Moreo 4916919833 added dataset for images 2026-07-02 18:21:35 +02:00
Alejandro Moreo a1dff57db0 refactoring and cleaning up 2026-06-30 18:02:23 +02:00
Alejandro Moreo e44056d860 integrating bayesian methods and related functionality, plus unit test refactor 2026-06-05 14:08:06 +02:00
Andrea Esuli 51190c2c7d val_split in pcc 2026-02-09 15:15:08 +01:00
Alejandro Moreo Fernandez 6db659e3c4 unifying n_bins in PQ and DMy 2025-11-18 10:13:34 +01:00
Alejandro Moreo Fernandez db49cd31be Merge branch 'devel' of github.com:HLT-ISTI/QuaPy into devel 2025-11-17 17:54:09 +01:00
Alejandro Moreo Fernandez 9da4fd57db added property samples to confidence regions 2025-11-17 17:53:56 +01:00
Alejandro Moreo Fernandez 047cb9e533 merged 2025-11-15 18:54:04 +01:00
Alejandro Moreo Fernandez 6388d9b549 merged 2025-11-15 18:03:06 +01:00
Alejandro Moreo Fernandez d9cf6cc11d index in labelled collection from versions restored 2025-11-15 17:56:37 +01:00
pglez82 c6492a0f20 fixing import 2025-11-15 17:04:44 +01:00
pglez82 e4c07e1835 changing the way the file is loaded 2025-11-15 16:51:48 +01:00
Alejandro Moreo Fernandez c2044cb200 Merge branch 'precisequant' of github.com:pglez82/QuaPy into pglez82-precisequant 2025-11-15 15:03:20 +01:00
pglez82 3268e9fada PQ (precise quantifier) 2025-11-14 18:35:40 +01:00
Alejandro Moreo Fernandez a868d2d561 import fix 2025-11-14 16:10:17 +01:00
Alejandro Moreo Fernandez 3c09b1c98a adding prev@densities in KDEyML, huge effiency improvement... 2025-11-13 18:45:07 +01:00
Alejandro Moreo Fernandez c11b99e08a improved ReadMe method 2025-10-22 18:51:35 +02:00
Alejandro Moreo Fernandez 854b3ba3f9 documented ReadMe 2025-10-20 18:33:45 +02:00
Alejandro Moreo Fernandez eafe486893 adding readme to non-aggregative 2025-10-20 18:13:34 +02:00
Alejandro Moreo Fernandez 1fb8500e87 improved doc 2025-10-09 12:49:08 +02:00
Alejandro Moreo Fernandez 3847db3838 mergin and solving pytests 2025-10-06 12:03:31 +02:00
Alejandro Moreo Fernandez 8adcc33c59 merged 2025-10-03 11:00:06 +02:00
Alejandro Moreo Fernandez 24ab704661 all examples but 15 (qunfold) properly working 2025-10-01 17:41:36 +02:00
Alejandro Moreo Fernandez edbc8bc201 clean 2025-10-01 10:26:57 +02:00
Alejandro Moreo Fernandez 3c16536b3d cleaning examples 2025-09-26 15:22:41 +02:00
Alejandro Moreo Fernandez 99c1755c81 improving plots 2025-09-25 13:18:35 +02:00
Alejandro Moreo Fernandez 265fcc2d92 tests passed; working on examples 2025-07-13 14:27:14 +02:00
Alejandro Moreo Fernandez 5b7f7d4f70 handling qunfold versioning, and more bug fix 2025-06-15 13:22:24 +02:00
Alejandro Moreo Fernandez e76e1de6a9 refactoring codebase 2025-05-23 12:27:49 +02:00
Alejandro Moreo Fernandez aac133817b dealing with unit tests 2025-04-25 13:52:05 +02:00
Alejandro Moreo Fernandez 960ca5076e refactoring no labelled collection and other improvements in EMQ 2025-04-23 12:25:05 +02:00
Alejandro Moreo Fernandez 5738821d10 refactoring w/o labelled collection 2025-04-20 22:09:18 +02:00
Alejandro Moreo Fernandez 075be93a23 refactoring w/o labelled collection 2025-04-20 22:05:46 +02:00
Alejandro Moreo Fernandez 8876d311e7 working on SCMQ, MCSQ, MCMQ ensembles 2024-12-02 17:39:06 +01:00
Alejandro Moreo Fernandez c8235ddb2a improving conf regions docs 2024-12-02 12:03:15 +01:00
Alejandro Moreo Fernandez c79b76516c repair unittest 2024-11-29 18:23:47 +01:00
Alejandro Moreo Fernandez 8c01e0927f repair unittest 2024-11-29 18:21:29 +01:00
Alejandro Moreo Fernandez 2728dfbaa6 bayesian cc now inherits from the new abstract class WithConfidenceABC, just like AggregativeBootstrap 2024-11-29 18:15:09 +01:00
Alejandro Moreo Fernandez a0c84c5510 documented confidence.py 2024-11-29 13:46:46 +01:00
Alejandro Moreo Fernandez 20343920dc adding confidence regions with bootstrap 2024-11-28 18:19:25 +01:00
Alejandro Moreo Fernandez ea92c45405 bugfix in bayesian cc, merged 2024-11-27 17:45:40 +01:00
Alejandro Moreo Fernandez 68d2f84de3 bugfix in bayesian method; float conversion was needed 2024-11-27 17:43:22 +01:00
Alejandro Moreo Fernandez 24c28edfd9 adding scmq 2024-10-16 16:00:23 +02:00
Mirko Bunse db8a870495 Instruct the user how to install qunfold in the case of an unsuccessful import 2024-09-17 10:48:53 +02:00